Burkholderia pseudomallei MSHR346

Strain Overview
Organism Name Burkholderia pseudomallei MSHR346 alt assembly ASM75610v1
Species Burkholderia pseudomallei
Strain MSHR346
Description/Title Microbe sample from Burkholderia pseudomallei
Annotated Genes 6319
Partial Genes 70
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name unknown
Isolation Source unknown
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 243
lepA
4
ace
1
narK
12
ndh
1
lipA
15
gmhD
13
gltB
2
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 4098963
Assembly Level Chromosome with gaps
Percent GC
Cross-References
NCBI BioSample Accession SAMN02866335
NCBI Taxonomy ID 28450
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6319
CDS 6153
pseudo 93
tRNA 60
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2552
Cytoplasmic Membrane 1234
Periplasmic 200
Outer Membrane 147
Extracellular 95
Unknown 1790
Unknown (This protein may have multiple localization sites) 170
Flagellar 20
Fimbrial 4
Host Associated 1
T3SS 3

Replicons

Name Length GC
Burkholderia pseudomallei strain MSHR346, complete sequence. 4099163 bp 67.7%
Replicon details
Burkholderia pseudomallei strain MSHR346 chromosome 2, complete sequence. 3255253 bp 68.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF