| Strain Overview | |
|---|---|
| Organism Name | Burkholderia glumae NCPPB 3923 |
| Species | Burkholderia glumae |
| Strain | NCPPB 3923 |
| Description/Title | Burkholderia glumae str. NCPPB 3923 |
| Annotated Genes | 6205 |
| Partial Genes | 1408 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Viet Nam |
| Isolation Source | missing |
| Sample Provider | |
|---|---|
| Name | Ralf Koebnik |
| koebnik@gmx.de | |
| Institution | Institut de Recherche pour le Developpement |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 1121 |
| Contig N50 | 11062 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03178256 |
| NCBI Taxonomy ID | 337 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6205 |
| CDS | 6067 |
| pseudo | 69 |
| tRNA | 58 |
| rRNA | 6 |
| ncRNA | 5 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2496 |
| Cytoplasmic Membrane | 1246 |
| Periplasmic | 154 |
| Outer Membrane | 115 |
| Extracellular | 110 |
| Unknown | 1785 |
| Unknown (This protein may have multiple localization sites) | 161 |
| Flagellar | 19 |
| Fimbrial | 4 |
| T3SS | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |