Burkholderia gladioli UCD-UG_CHAPALOTE

Strain Overview
Organism Name Burkholderia gladioli UCD-UG_CHAPALOTE
Species Burkholderia gladioli
Strain UCD-UG_CHAPALOTE
Description/Title Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE
Annotated Genes 7387
Partial Genes 487
Host Information
Host Species Taxonomic Name chapalote corn
Host Species Common Name chapalote corn
Geographic Location
Location Name Canada: Univ of Guelph, Guelph, ON
Isolation Source missing
Sample Provider
Name Cassandra Ettinger
E-mail clettinger@ucdavis.edu
Institution UC Davis
Date Collected Aug-2008

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000757585.1
Assembly Status latest
Scaffolds 109
Contigs 110
Contig N50 148354
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03019910
NCBI Taxonomy ID 28095
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7387
CDS 7264
tRNA 60
pseudo 47
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3154
Cytoplasmic Membrane 1554
Periplasmic 203
Outer Membrane 180
Extracellular 111
Unknown 1821
Unknown (This protein may have multiple localization sites) 240
Flagellar 2
Host Associated 1

Replicons

109 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF