Strain Overview | |
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Organism Name | Burkholderia dolosa PC543 |
Species | Burkholderia dolosa |
Strain | PC543 |
Description/Title | Sample from Burkholderia dolosa PC543 |
Annotated Genes | 5620 |
Partial Genes | 254 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
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Location Name | USA |
Isolation Source | airway |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 472 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 64 |
Contig N50 | 196616 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02470544 |
NCBI Taxonomy ID | 1385930 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5620 |
CDS | 5461 |
pseudo | 93 |
tRNA | 61 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2352 |
Cytoplasmic Membrane | 1159 |
Periplasmic | 191 |
Outer Membrane | 134 |
Extracellular | 88 |
Unknown | 1389 |
Unknown (This protein may have multiple localization sites) | 150 |
Flagellar | 20 |
Fimbrial | 3 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Burkholderia dolosa PC543 chromosome 1, whole genome shotgun sequence. | 3314966 bp | 66.9% |
Replicon details
|
Burkholderia dolosa PC543 chromosome 2, whole genome shotgun sequence. | 2159136 bp | 67.3% |
Replicon details
|
Burkholderia dolosa PC543 chromosome 3, whole genome shotgun sequence. | 823866 bp | 67.0% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |