Strain Overview | |
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Organism Name | Burkholderia cepacia DWS 16B-4 |
Species | Burkholderia cepacia |
Strain | DWS 16B-4 |
Description/Title | Microbe sample from Burkholderia cepacia |
Annotated Genes | 7305 |
Partial Genes | 117 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | Australia |
Isolation Source | missing |
Sample Provider | |
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Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | missing |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 807 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 3 |
Contigs | 4 |
Contig N50 | 3204925 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02796046 |
NCBI Taxonomy ID | 292 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7305 |
CDS | 7185 |
tRNA | 67 |
pseudo | 34 |
rRNA | 18 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3141 |
Cytoplasmic Membrane | 1562 |
Periplasmic | 232 |
Outer Membrane | 160 |
Extracellular | 91 |
Unknown | 1882 |
Unknown (This protein may have multiple localization sites) | 205 |
Flagellar | 16 |
Fimbrial | 2 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Burkholderia cepacia strain DWS 16B-4 scaffold1, whole genome shotgun sequence. | 3723449 bp | 67.0% |
Replicon details
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Burkholderia cepacia strain DWS 16B-4 scaffold2, whole genome shotgun sequence. | 3205784 bp | 67.3% |
Replicon details
|
Burkholderia cepacia strain DWS 16B-4 scaffold3, whole genome shotgun sequence. | 1183030 bp | 66.6% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |