Burkholderia cepacia DWS 16B-4

Strain Overview
Organism Name Burkholderia cepacia DWS 16B-4
Species Burkholderia cepacia
Strain DWS 16B-4
Description/Title Microbe sample from Burkholderia cepacia
Annotated Genes 7305
Partial Genes 117
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name Australia
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected missing

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 807
gltB
11
lepA
11
phaC
6
atpD
16
trpB
147
gyrB
271
recA
143
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 3
Contigs 4
Contig N50 3204925
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02796046
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7305
CDS 7185
tRNA 67
pseudo 34
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3141
Cytoplasmic Membrane 1562
Periplasmic 232
Outer Membrane 160
Extracellular 91
Unknown 1882
Unknown (This protein may have multiple localization sites) 205
Flagellar 16
Fimbrial 2
T3SS 2

Replicons

Name Length GC
Burkholderia cepacia strain DWS 16B-4 scaffold1, whole genome shotgun sequence. 3723449 bp 67.0%
Replicon details
Burkholderia cepacia strain DWS 16B-4 scaffold2, whole genome shotgun sequence. 3205784 bp 67.3%
Replicon details
Burkholderia cepacia strain DWS 16B-4 scaffold3, whole genome shotgun sequence. 1183030 bp 66.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF