| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia Bu72 |
| Species | Burkholderia cepacia |
| Strain | Bu72 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Burkholderia cepacia Bu72 |
| Annotated Genes | 6577 |
| Partial Genes | 135 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | missing |
| Isolation Source | not provided; submitted under MIGS 2.1 |
| Latitude/Longitude | missing |
| Environmental Feature (?) | not provided; submitted under MIGS 2.1 |
| Environmental Material (?) | not provided; submitted under MIGS 2.1 |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 44 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 3 |
| Contigs | 6 |
| Contig N50 | 1987923 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02597170 |
| NCBI Taxonomy ID | 886913 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6577 |
| CDS | 6436 |
| tRNA | 67 |
| pseudo | 53 |
| rRNA | 18 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2867 |
| Cytoplasmic Membrane | 1398 |
| Periplasmic | 224 |
| Outer Membrane | 154 |
| Extracellular | 99 |
| Unknown | 1512 |
| Unknown (This protein may have multiple localization sites) | 190 |
| Flagellar | 3 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cepacia Bu72 Burce_BCL.1, whole genome shotgun sequence. | 3418363 bp | 66.9% |
Replicon details
|
| Burkholderia cepacia Bu72 Burce_BCL.2_C, whole genome shotgun sequence. | 2934259 bp | 66.8% |
Replicon details
|
| Burkholderia cepacia Bu72 Burce_BCL.3, whole genome shotgun sequence. | 1071184 bp | 67.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |