| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia ATCC 25416 - Assembly GCF_000473485.1 |
| Species | Burkholderia cepacia |
| Strain | ATCC 25416 |
| Description/Title | Generic sample from Burkholderia cepacia ATCC 25416 |
| Annotated Genes | 7720 |
| Partial Genes | 254 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | onion, Allium cepa |
| Host Species Common Name | onion, Allium cepa |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 1948 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 10 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 4 |
| Contigs | 46 |
| Contig N50 | 369461 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02440719 |
| NCBI Taxonomy ID | 983594 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7720 |
| CDS | 7578 |
| tRNA | 67 |
| pseudo | 49 |
| rRNA | 23 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3222 |
| Cytoplasmic Membrane | 1620 |
| Periplasmic | 242 |
| Outer Membrane | 181 |
| Extracellular | 102 |
| Unknown | 1994 |
| Unknown (This protein may have multiple localization sites) | 224 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cepacia ATCC 25416 BurcepDRAFT_BCM.1, whole genome shotgun sequence. | 3810438 bp | 66.4% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 BurcepDRAFT_BCM.2, whole genome shotgun sequence. | 3405813 bp | 67.0% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 BurcepDRAFT_BCM.3, whole genome shotgun sequence. | 199222 bp | 62.1% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 BurcepDRAFT_BCM.4, whole genome shotgun sequence. | 1197237 bp | 66.4% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |