Strain Overview | |
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Organism Name | Burkholderia cenocepacia DWS 37E-2 |
Species | Burkholderia cenocepacia |
Strain | DWS 37E-2 |
Description/Title | Microbe sample from Burkholderia cenocepacia |
Annotated Genes | 5851 |
Partial Genes | 125 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | Australia |
Isolation Source | soil |
Environmental Material (?) | soil |
Sample Provider | |
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Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | 2007 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 811 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02796570 |
NCBI Taxonomy ID | 95486 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5851 |
CDS | 5735 |
tRNA | 67 |
pseudo | 30 |
rRNA | 18 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2534 |
Cytoplasmic Membrane | 1244 |
Periplasmic | 189 |
Outer Membrane | 143 |
Extracellular | 72 |
Unknown | 1386 |
Unknown (This protein may have multiple localization sites) | 173 |
Flagellar | 24 |
Fimbrial | 7 |
T3SS | 4 |
Name | Length | GC | |
---|---|---|---|
Burkholderia cenocepacia strain DWS 37E-2 chromosome 1, complete sequence. | 3241886 bp | 66.4% |
Replicon details
|
Burkholderia cenocepacia strain DWS 37E-2 chromosome 2, complete sequence. | 2375865 bp | 66.6% |
Replicon details
|
Burkholderia cenocepacia strain DWS 37E-2 chromosome 3, complete sequence. | 994670 bp | 66.6% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |