Burkholderia cenocepacia D2AES

Strain Overview
Organism Name Burkholderia cenocepacia D2AES
Species Burkholderia cenocepacia
Strain D2AES
Description/Title Sample from Burkholderia cenocepacia D2AES
Annotated Genes 6916
Partial Genes 545
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Australia
Isolation Source sputum
Sample Provider
Name
E-mail
Institution Macquarie University, Department of Chemistry and Biomolecular scieces
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 632
gltB
134
lepA
273
gyrB
379
trpB
122
phaC
166
recA
49
atpD
16
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 339
Contig N50 43659
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02769656
NCBI Taxonomy ID 1165869
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6916
CDS 6789
pseudo 70
tRNA 50
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2960
Cytoplasmic Membrane 1480
Periplasmic 220
Outer Membrane 166
Extracellular 97
Unknown 1704
Unknown (This protein may have multiple localization sites) 203
Flagellar 12
Fimbrial 1

Replicons

339 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF