Strain Overview | |
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Organism Name | Burkholderia cenocepacia D2AES |
Species | Burkholderia cenocepacia |
Strain | D2AES |
Description/Title | Sample from Burkholderia cenocepacia D2AES |
Annotated Genes | 6916 |
Partial Genes | 545 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
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Location Name | Australia |
Isolation Source | sputum |
Sample Provider | |
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Name | |
Institution | Macquarie University, Department of Chemistry and Biomolecular scieces |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 632 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 339 |
Contig N50 | 43659 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02769656 |
NCBI Taxonomy ID | 1165869 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6916 |
CDS | 6789 |
pseudo | 70 |
tRNA | 50 |
rRNA | 6 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2960 |
Cytoplasmic Membrane | 1480 |
Periplasmic | 220 |
Outer Membrane | 166 |
Extracellular | 97 |
Unknown | 1704 |
Unknown (This protein may have multiple localization sites) | 203 |
Flagellar | 12 |
Fimbrial | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |