| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia S2AES |
| Species | Burkholderia cenocepacia |
| Strain | S2AES |
| Description/Title | Sample from Burkholderia cenocepacia S2AES |
| Annotated Genes | 6758 |
| Partial Genes | 620 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | Australia |
| Sample Provider | |
|---|---|
| Name | |
| Institution | Macquarie University, Department of Chemistry and Biomolecular scieces |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 39 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 440 |
| Contig N50 | 32510 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02769657 |
| NCBI Taxonomy ID | 1165868 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6758 |
| CDS | 6617 |
| pseudo | 82 |
| tRNA | 52 |
| rRNA | 6 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2850 |
| Cytoplasmic Membrane | 1460 |
| Periplasmic | 228 |
| Outer Membrane | 155 |
| Extracellular | 91 |
| Unknown | 1685 |
| Unknown (This protein may have multiple localization sites) | 200 |
| Flagellar | 12 |
| Fimbrial | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |