| Strain Overview | |
|---|---|
| Organism Name | Burkholderia ambifaria IOP40-10 |
| Species | Burkholderia ambifaria |
| Strain | IOP40-10 |
| Description/Title | Generic sample from Burkholderia ambifaria IOP40-10 |
| Annotated Genes | 7034 |
| Partial Genes | 861 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | Joint Genome Institute, U.S. Department of Energy |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 629 |
| Contig N50 | 24355 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN00000046 |
| NCBI Taxonomy ID | 396596 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7034 |
| CDS | 6901 |
| pseudo | 75 |
| tRNA | 54 |
| ncRNA | 2 |
| rRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2951 |
| Cytoplasmic Membrane | 1448 |
| Periplasmic | 218 |
| Outer Membrane | 164 |
| Extracellular | 104 |
| Unknown | 1836 |
| Unknown (This protein may have multiple localization sites) | 196 |
| Flagellar | 4 |
| Fimbrial | 1 |
| T3SS | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |