Strain Overview | |
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Organism Name | Burkholderia pseudomallei 1026b - Assembly GCF_000260515.1 |
Species | Burkholderia pseudomallei |
Strain | 1026b |
Description/Title | Sample from Burkholderia pseudomallei 1026b |
Annotated Genes | 6264 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | septicemic melioidosis |
Geographic Location | |
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Location Name | Thailand |
Isolation Source | blood |
Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | NCBI |
Date Collected | 1993 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bpseudomallei | 102 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604257 |
NCBI Taxonomy ID | 884204 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Burkholderia pseudomallei 1026b chromosome 1, complete sequence. | |
Burkholderia pseudomallei 1026b chromosome 2, complete sequence. |
Feature | Count |
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gene | 6262 |
CDS | 6069 |
tRNA | 59 |
rRNA | 12 |
pseudo | 1 |
Localization | Count |
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Cytoplasmic | 2513 |
Cytoplasmic Membrane | 1197 |
Periplasmic | 200 |
Outer Membrane | 137 |
Extracellular | 102 |
Unknown | 1785 |
Unknown (This protein may have multiple localization sites) | 169 |
Flagellar | 24 |
Fimbrial | 7 |
T3SS | 6 |
Feature | Count |
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General function prediction only | 553 |
Amino acid transport and metabolism | 473 |
Function unknown | 471 |
Transcription | 426 |
Cell wall/membrane/envelope biogenesis | 338 |
Energy production and conversion | 317 |
Carbohydrate transport and metabolism | 305 |
Inorganic ion transport and metabolism | 248 |
Lipid transport and metabolism | 242 |
Signal transduction mechanisms | 241 |
Secondary metabolites biosynthesis, transport and catabolism | 203 |
Coenzyme transport and metabolism | 196 |
Translation, ribosomal structure and biogenesis | 181 |
Intracellular trafficking, secretion, and vesicular transport | 174 |
Posttranslational modification, protein turnover, chaperones | 166 |
Replication, recombination and repair | 152 |
Cell motility | 127 |
Nucleotide transport and metabolism | 92 |
Defense mechanisms | 60 |
Cell cycle control, cell division, chromosome partitioning | 32 |
Chromatin structure and dynamics | 5 |
Extracellular structures | 2 |
RNA processing and modification | 1 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei 1026b chromosome 1, complete sequence. | 4092668 bp | 67.9% |
Replicon details
|
Burkholderia pseudomallei 1026b chromosome 2, complete sequence. | 3138747 bp | 68.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |