| Strain Overview | |
|---|---|
| Organism Name | Burkholderia pseudomallei 1710b |
| Species | Burkholderia pseudomallei |
| Strain | 1710b |
| Description/Title | Sample from Burkholderia pseudomallei 1710b |
| Annotated Genes | 6239 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| johnston@ncbi.nlm.nih.gov | |
| Institution | NCBI |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bpseudomallei | 177 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02604036 |
| NCBI Taxonomy ID | 320372 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia pseudomallei 1710b chromosome I, complete sequence. | |
| Burkholderia pseudomallei 1710b chromosome II, complete sequence. |
| Feature | Count |
|---|---|
| gene | 6419 |
| CDS | 6341 |
| tRNA | 60 |
| rRNA | 12 |
| pseudo | 3 |
| misc_RNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3011 |
| Cytoplasmic Membrane | 1216 |
| Periplasmic | 185 |
| Outer Membrane | 145 |
| Extracellular | 154 |
| Unknown | 1637 |
| Unknown (This protein may have multiple localization sites) | 207 |
| Flagellar | 28 |
| Fimbrial | 9 |
| Host Associated | 1 |
| T3SS | 5 |
| Feature | Count |
|---|---|
| General function prediction only | 515 |
| Amino acid transport and metabolism | 469 |
| Function unknown | 462 |
| Transcription | 422 |
| Cell wall/membrane/envelope biogenesis | 341 |
| Energy production and conversion | 318 |
| Carbohydrate transport and metabolism | 305 |
| Inorganic ion transport and metabolism | 246 |
| Signal transduction mechanisms | 240 |
| Lipid transport and metabolism | 239 |
| Secondary metabolites biosynthesis, transport and catabolism | 205 |
| Coenzyme transport and metabolism | 198 |
| Translation, ribosomal structure and biogenesis | 188 |
| Intracellular trafficking, secretion, and vesicular transport | 181 |
| Posttranslational modification, protein turnover, chaperones | 170 |
| Replication, recombination and repair | 169 |
| Cell motility | 130 |
| Nucleotide transport and metabolism | 93 |
| Defense mechanisms | 59 |
| Cell cycle control, cell division, chromosome partitioning | 31 |
| Chromatin structure and dynamics | 5 |
| Extracellular structures | 2 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia pseudomallei 1710b chromosome I, complete sequence. | 4126292 bp | 67.6% |
Replicon details
|
| Burkholderia pseudomallei 1710b chromosome II, complete sequence. | 3181762 bp | 68.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |