Burkholderia cenocepacia J2315 Pathogen Associated Gene Analysis

This analysis is based on the study "The association of virulence factors with genomic islands" (Ho Sui, Fedynak, Hsiao, Langille, and Brinkman (2009), PLoS ONE).

BLAST similarity searches were performed against the deduced proteomes of 1292 pathogenic and 1490 non-pathogenic sequenced prokaryotic genomes downloaded from the National Center for Biotechnology Information FTP site in December 2014. An e-value cut-off of 10-7 was used to exclude distant homologs. Pathogen or non-pathogen status for each genome was obtained through the NCBI Complete Microbial Genomes webpage (Haft et al. 2005) and then manually curated to ensure data quality and completeness.

The current categories for 'Status' are:

1) Pathogen: Protein only had BLAST hits to proteins in pathogenic strains.

2) Non-Pathogen: Protein only had BLAST hits to proteins in non-pathogenic strains.

3) Common: The protein had BLAST hits to proteins in both pathogenic and non-pathogenic strains.

The 'Virulence Evidence?' column indicates whether any evidence is available in the database for this gene being virulence associated (i.e. VFDB, Victors Virulence Factors, curation by Burkholderia Genome Database, etc.).

Important note on this analysis: The list of genes defined as being pathogen-associated will change as more genomes are sequenced. This analysis will be updated at a later time in order to reflect this.

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291 results were returned for your query Previous1..3456789101112..15Next Ordered by , ascending
Replicon Name Locus Tag Gene Symbol Product Description Status Genus Hits Virulence Evidence?
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL3205C hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1050 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome. pBCA010 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome. pBCA050 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL0409a hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL2476 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL2905 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL1129 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0245A hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM2513 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0025 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome. pBCA071 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL2006 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL2982A hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM2027a hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL1572 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 1, complete genome. BCAL1365 putative lipoprotein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0540a BcepMu15 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome. pBCA040 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 3, complete genome. BCAS0648 hypothetical protein Pathogen 1 -