Burkholderia cenocepacia J2315 Pathogen Associated Gene Analysis

This analysis is based on the study "The association of virulence factors with genomic islands" (Ho Sui, Fedynak, Hsiao, Langille, and Brinkman (2009), PLoS ONE).

BLAST similarity searches were performed against the deduced proteomes of 1292 pathogenic and 1490 non-pathogenic sequenced prokaryotic genomes downloaded from the National Center for Biotechnology Information FTP site in December 2014. An e-value cut-off of 10-7 was used to exclude distant homologs. Pathogen or non-pathogen status for each genome was obtained through the NCBI Complete Microbial Genomes webpage (Haft et al. 2005) and then manually curated to ensure data quality and completeness.

The current categories for 'Status' are:

1) Pathogen: Protein only had BLAST hits to proteins in pathogenic strains.

2) Non-Pathogen: Protein only had BLAST hits to proteins in non-pathogenic strains.

3) Common: The protein had BLAST hits to proteins in both pathogenic and non-pathogenic strains.

The 'Virulence Evidence?' column indicates whether any evidence is available in the database for this gene being virulence associated (i.e. VFDB, Victors Virulence Factors, curation by Burkholderia Genome Database, etc.).

Important note on this analysis: The list of genes defined as being pathogen-associated will change as more genomes are sequenced. This analysis will be updated at a later time in order to reflect this.

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291 results were returned for your query Previous1..45678910111213..15Next Ordered by Locus Tag , descending
Replicon Name Locus Tag Gene Symbol Product Description Status Genus Hits Virulence Evidence?
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1042 putative phage membrane protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1035 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1033 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1031 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1030 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1028 hypothetical protein Pathogen 2 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM1026 putative phage DNA-binding protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0841 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0838 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0828 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0808 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0781 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0772 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0745 putative shikimate kinase Pathogen 2 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0719 hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0701 putative lipoprotein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0582A hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0545a hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0529A hypothetical protein Pathogen 1 -
Burkholderia cenocepacia J2315 chromosome 2, complete genome. BCAM0525A hypothetical protein Pathogen 1 -