Burkholderia cenocepacia J2315, BCAM0001 (ecfJ)

Gene Feature Overview

Strain	Burkholderia cenocepacia J2315 GCF_000009485.1|latest
Locus Tag	BCAM0001
NCBI Locus Tag	QU43_RS54400
Name	ecfJ
Replicon	chromosome 2
Genomic location	230 - 829 (+ strand)

Cross-References

RefSeq	WP_006485145.1
GI	206561869
Entrez	6927816
GI	206561869
INSDC	CAO00537.1
NCBI Locus Tag	QU43_RS54400
NCBI Old Locus Tag	BCAM0001
RefSeq	WP_006485145.1,GeneID
UniParc	UPI0001765FC0
UniProtKB Acc	B3KYE4
UniProtKB ID	B3KYE4_BURCJ
UniRef100	UniRef100_A0A0D1DKE1
UniRef50	UniRef50_U2FGY1
UniRef90	UniRef90_A2WH75

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma factor Product Name Confidence: Class 2
Synonyms	sigma factor 70 EcfJ
Evidence for Translation
Charge (pH 7)	-4.92
Kyte-Doolittle Hydrophobicity Value	-0.286
Molecular Weight (kDa)	22735.6
Isoelectric Point (pI)	5.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 212 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group	BG004414 (617 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: BCAM0001 Search term: ecfJ Search term: RNA polymerase sigma factor

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability. Menard A, de Los Santos PE, Graindorge A, Cournoyer B BMC Genomics 2007 Sep 4;8:308 PubMed ID: 17784948