Burkholderia cenocepacia J2315, BCAL3134 (rmlA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL3134
NCBI Locus TagQU43_RS52390
Name
rmlA
Replicon chromosome 1
Genomic location 3425276 - 3426169 (- strand)

Cross-References

RefSeq WP_006485115.1
GI 206561478
Entrez 6934047
GI 206561478
INSDC CAR53457.1
NCBI Locus Tag QU43_RS52390
NCBI Old Locus Tag BCAL3134
RefSeq WP_006485115.1,GeneID
UniParc UPI00017B9995
UniProtKB Acc B4ECS5
UniProtKB ID B4ECS5_BURCJ
UniRef100 UniRef100_B4ECS5
UniRef50 UniRef50_P37744
UniRef90 UniRef90_Q9AEV6

Product

Feature Type CDS
Coding Frame 1
Product Name
glucose-1-phosphate thymidylyltransferase
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) -4.45
Kyte-Doolittle Hydrophobicity Value -0.102
Molecular Weight (kDa) 32856.3
Isoelectric Point (pI) 5.90

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6N0U TRANSFERASE 11/07/18 Crystal structure of a glucose-1-phosphate thymidylyltransferase from Burkholderia phymatum bound to 2'-deoxy-thymidine-B-L-rhamnose PARABURKHOLDERIA PHYMATUM (STRAIN DSM 17167 / CIP 108236 / LMG 21445 / STM815) 2.1 X-RAY DIFFRACTION 90.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 632 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000731 (658 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL3134
Search term: rmlA

Human Homologs

Ensembl 97, assembly GRCh38.p12
eukaryotic translation initiation factor 2B subunit gamma [Source:HGNC Symbol;Acc:HGNC:3259]
E-value: 1.1e-05
Percent Identity: 37.5
Ensembl 97, assembly GRCh38.p12
eukaryotic translation initiation factor 2B subunit gamma [Source:HGNC Symbol;Acc:HGNC:3259]
E-value: 1.1e-05
Percent Identity: 37.5
Ensembl 97, assembly GRCh38.p12
eukaryotic translation initiation factor 2B subunit gamma [Source:HGNC Symbol;Acc:HGNC:3259]
E-value: 1.1e-05
Percent Identity: 37.5
Ensembl 97, assembly GRCh38.p12
eukaryotic translation initiation factor 2B subunit gamma [Source:HGNC Symbol;Acc:HGNC:3259]
E-value: 1.1e-05
Percent Identity: 37.5

References

A new route to dTDP-6-deoxy-l-talose and dTDP-L-rhamnose: dTDP-L-rhamnose 4-epimerase in Burkholderia thailandensis.
Yoo HG, Kwon SY, Karki S, Kwon HJ
Bioorg Med Chem Lett 2011 Jul 1;21(13):3914-7
PubMed ID: 21640586