Burkholderia cenocepacia J2315, BCAL0813 (rpoN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia cenocepacia J2315
Locus Tag
BCAL0813
NCBI Locus TagQU43_RS40615
Name
rpoN
Replicon chromosome 1
Genomic location 882584 - 884089 (- strand)

Cross-References

RefSeq WP_006483132.1
GI 206559206
Entrez 6931232
GI 206559206
INSDC CAR51119.1
NCBI Locus Tag QU43_RS40615
NCBI Old Locus Tag BCAL0813
RefSeq WP_006483132.1,GeneID
UniParc UPI00017B9194
UniProtKB Acc B4EAS4
UniProtKB ID B4EAS4_BURCJ
UniRef100 UniRef100_B5M998
UniRef50 UniRef50_A1UZM5
UniRef90 UniRef90_A0A095EMC8

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-54
Product Name Confidence: Class 1
Evidence for Translation
Charge (pH 7) -14.86
Kyte-Doolittle Hydrophobicity Value -0.266
Molecular Weight (kDa) 54735.1
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 397 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002642 (679 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL0813
Search term: rpoN

References

Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages.
Saldías MS, Lamothe J, Wu R, Valvano MA.
Infect Immun. 2008 Mar;76(3):1059-67.
PubMed ID: 18195023
Burkholderia cenocepacia requires the RpoN sigma factor for biofilm formation and intracellular trafficking within macrophages.
Saldías MS, Lamothe J, Wu R, Valvano MA.
Infect Immun. 2008 Mar;76(3):1059-67.
PubMed ID: 18195023