Burkholderia cenocepacia MC0-3, Bcenmc03_2289 (ecfD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia cenocepacia MC0-3
GCF_000019505.1|latest
Locus Tag
Bcenmc03_2289
NCBI Locus TagBCENMC03_RS11610
Name
ecfD
Replicon chromosome 1
Genomic location 2562441 - 2563004 (+ strand)

Cross-References

RefSeq WP_006478250.1
GI 170733625
Entrez 6123953
GI 170733625
INSDC ACA91450.1
NCBI Locus Tag BCENMC03_RS11610
NCBI Old Locus Tag Bcenmc03_2289
RefSeq WP_006478250.1
UniParc UPI00006DA063
UniProtKB Acc B1JVQ7
UniProtKB ID B1JVQ7_BURCC
UniRef100 UniRef100_B1JVQ7
UniRef50 UniRef50_Q0KCU5
UniRef90 UniRef90_A0A071M5F0

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-70
Product Name Confidence: Class 1
Synonyms sigma factor 70 EcfD
Evidence for Translation
Charge (pH 7) -11.09
Kyte-Doolittle Hydrophobicity Value -0.473
Molecular Weight (kDa) 21146.4
Isoelectric Point (pI) 4.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 179 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG002152 (654 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcenmc03_2289
Search term: ecfD

Human Homologs

References

No references are associated with this feature.