Burkholderia pseudomallei K96243, BPSS1617 (bpscR2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
Locus Tag
BPSS1617
Name
bpscR2
Synonym: sctR
Replicon chromosome 2
Genomic location 2191756 - 2192406 (- strand)
CommentThis gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238).

Cross-References

RefSeq YP_111625.1
GI 53722640
Entrez 3095168
GI 53722640
INSDC CAH39092.1
NCBI Locus Tag BPSS1617
RefSeq YP_111625.1,GeneID
UniParc UPI000043BD74
UniProtKB Acc Q63JU7
UniProtKB ID Q63JU7_BURPS
UniRef100 UniRef100_A3P7B8
UniRef50 UniRef50_Q52488
UniRef90 UniRef90_A3P7B8

Product

Feature Type CDS
Coding Frame 1
Product Name
type III secretion system inner membrane export apparatus protein BpscR2 (T3SS-2)
Product Name Confidence: Class 2
Synonyms type III secretion system protein
Evidence for Translation
Charge (pH 7) 3.46
Kyte-Doolittle Hydrophobicity Value 0.795
Molecular Weight (kDa) 23710.2
Isoelectric Point (pI) 9.91

Subcellular localization

Individual Mappings
Localization Confidence PMID
Flagellar
Note: This is based on PSORTb V3.0 secondary localization prediction
Class 3
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 325 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG017463 (416 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS1617
Search term: bpscR2

References

PubMed ID: 15621426
PubMed ID: 28664152