Burkholderia pseudomallei K96243, BPSS1612 (sctF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
Locus Tag
BPSS1612
Name
sctF
Replicon chromosome 2
Genomic location 2188778 - 2188966 (- strand)
CommentThis gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238).

Cross-References

RefSeq YP_111620.1
GI 53722635
Entrez 3096034
GI 53722635
INSDC CAH39087.1
NCBI Locus Tag BPSS1612
RefSeq YP_111620.1,GeneID
UniParc UPI000043BD6F
UniProtKB Acc Q63JV2
UniProtKB ID Q63JV2_BURPS
UniRef100 UniRef100_A0A069BGR4
UniRef50 UniRef50_A0A088X2F2
UniRef90 UniRef90_A0A069BGR4

Product

Feature Type CDS
Coding Frame 1
Product Name
type III secretion system outer rod/major needle component SctF (T3SS-2)
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) 0.98
Kyte-Doolittle Hydrophobicity Value -0.035
Molecular Weight (kDa) 6374.4
Isoelectric Point (pI) 9.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Pathogenic
Found only in pathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG019914 (297 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS1612
Search term: sctF

References

PubMed ID: 15621426
PubMed ID: 28664152