Burkholderia pseudomallei K96243, BPSS0180 (tssA-3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSS0180
Name
tssA-3
Replicon chromosome 2
Genomic location 240310 - 241455 (+ strand)
CommentGene is part of a cluster known as the type VI secretion system gene cluster tss-3 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-4 cluster later (PMID:22007185)

Cross-References

RefSeq YP_110201.1
GI 53721216
Entrez 3096543
GI 53721216
INSDC CAH37625.1
NCBI Locus Tag BPSS0180
RefSeq YP_110201.1,GeneID
UniParc UPI000043B804
UniProtKB Acc Q63NW8
UniProtKB ID Q63NW8_BURPS
UniRef100 UniRef100_Q63NW8
UniRef50 UniRef50_Q63NW8
UniRef90 UniRef90_Q63NW8

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system protein TssA-3 (T6SS-4)
Product Name Confidence: Class 2
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) -9.67
Kyte-Doolittle Hydrophobicity Value -0.261
Molecular Weight (kDa) 40632.0
Isoelectric Point (pI) 5.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 54 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG016105 (489 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS0180
Search term: tssA-3

Human Homologs

References

In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433
Strategies for Intracellular Survival of Burkholderia pseudomallei.
Allwood EM, Devenish RJ, Prescott M, Adler B, Boyce JD
Front Microbiol 2011;2:170
PubMed ID: 22007185
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA, Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D
Mol Microbiol 2007 Jun;64(6):1466-85
PubMed ID: 17555434