Burkholderia pseudomallei K96243, BPSS0088 (bpaD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSS0088
Name
bpaD
Replicon chromosome 2
Genomic location 105290 - 107227 (+ strand)

Cross-References

RefSeq YP_110111.1
GI 53721126
Entrez 3095776
GI 53721126
INSDC CAH37534.1
NCBI Locus Tag BPSS0088
RefSeq YP_110111.1,GeneID
UniParc UPI000043B7AA
UniProtKB Acc Q63P58
UniProtKB ID Q63P58_BURPS
UniRef100 UniRef100_Q63P58
UniRef50 UniRef50_Q63P58
UniRef90 UniRef90_Q63P58

Product

Feature Type CDS
Coding Frame 1
Product Name
putative trimeric autoransporter, BpaD
Product Name Confidence: Class 2
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) -22.55
Kyte-Doolittle Hydrophobicity Value -0.446
Molecular Weight (kDa) 59418.7
Isoelectric Point (pI) 3.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 93 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG020400 (15 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS0088
Search term: bpaD

Human Homologs

References

Functional characterization of Burkholderia pseudomallei trimeric autotransporters.
Campos CG, Byrd MS, Cotter PA
Infect Immun 2013 Aug;81(8):2788-99
PubMed ID: 23716608