Burkholderia cenocepacia J2315, BCAL1892 (rpoS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL1892
NCBI Locus TagQU43_RS46005
Name
rpoS
Synonym: sigL
Replicon chromosome 1
Genomic location 2088369 - 2089457 (- strand)

Cross-References

RefSeq WP_006484452.1
GI 206560255
Entrez 6932100
GI 206560255
INSDC CAR52192.1
NCBI Locus Tag QU43_RS46005
NCBI Old Locus Tag BCAL1892
RefSeq WP_006484452.1,GeneID
UniParc UPI00017B95B0
UniProtKB Acc B4EAX7
UniProtKB ID B4EAX7_BURCJ
UniRef100 UniRef100_B4EAX7
UniRef50 UniRef50_Q0K953
UniRef90 UniRef90_C5AFI3

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoS
Product Name Confidence: Class 1
Synonyms sigma factor 70 SigL
Evidence for Translation
Charge (pH 7) -14.55
Kyte-Doolittle Hydrophobicity Value -0.636
Molecular Weight (kDa) 41138.6
Isoelectric Point (pI) 4.95

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG001657 (653 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL1892
Search term: rpoS

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948