Burkholderia cenocepacia J2315, BCAL1856 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL1856
NCBI Locus TagQU43_RS45820
Name
rimO
Replicon chromosome 1
Genomic location 2047442 - 2048803 (- strand)

Cross-References

RefSeq WP_006485253.1
GI 206560219
Entrez 6932078
GI 206560219
INSDC CAR52156.1
NCBI Locus Tag QU43_RS45820
NCBI Old Locus Tag BCAL1856
RefSeq WP_006485253.1,GeneID
UniParc UPI00017B9520
UniProtKB Acc B4EAF5
UniProtKB ID RIMO_BURCJ
UniRef100 UniRef100_B4EAF5
UniRef50 UniRef50_A1S2T9
UniRef90 UniRef90_B2JG80

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosomal protein S12 methylthiotransferase
Synonyms
Evidence for Translation
Charge (pH 7) -15.09
Kyte-Doolittle Hydrophobicity Value -0.123
Molecular Weight (kDa) 49500.2
Isoelectric Point (pI) 5.08

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 640 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG001621 (653 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL1856
Search term: rimO

Human Homologs

Ensembl 97, assembly GRCh38.p12
CDK5 regulatory subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:15880]
E-value: 2.9e-31
Percent Identity: 25.5
Ensembl 97, assembly GRCh38.p12
CDK5 regulatory subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:15880]
E-value: 2.9e-31
Percent Identity: 25.5

References

No references are associated with this feature.