Burkholderia cenocepacia J2315, BCAM1440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd05466 PBP2_LTTR_substrate 109 305 1.19032E-15
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 18 104 9.29E-17
SUPERFAMILY SSF53850 102 307 1.21E-23
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 106 306 2.1E-24
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 18 75 16.088
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 20 79 9.5E-12
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 18 109 3.6E-17
Gene3D G3DSA:3.40.190.290 110 312 4.6E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.