Burkholderia cenocepacia J2315, BCAL1879 (hfq)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003723	RNA binding	EXP Inferred from Experiment
Biological Process	GO:0006979	response to oxidative stress	IPI Inferred from Physical Interaction
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00436	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00436	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj03018	RNA degradation	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF17209	Hfq protein	IPR005001	RNA-binding protein Hfq	8	70	1.1E-31
CDD	cd01716	Hfq	IPR005001	RNA-binding protein Hfq	7	65	3.8565E-28
Hamap	MF_00436	RNA-binding protein Hfq [hfq].	IPR005001	RNA-binding protein Hfq	1	65	27.79
TIGRFAM	TIGR02383	Hfq: RNA chaperone Hfq	IPR005001	RNA-binding protein Hfq	8	65	1.1E-28
SUPERFAMILY	SSF50182		IPR010920	LSM domain superfamily	8	71	1.53E-23
Gene3D	G3DSA:2.30.30.100				1	77	3.5E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.