Burkholderia cenocepacia J2315, BCAL0227 (rpoC)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006351	transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04983	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04983	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04983	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj00240	Pyrimidine metabolism	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	bcj00230	Purine metabolism	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	bcj03020	RNA polymerase	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	bcj01100	Metabolic pathways	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd02655	RNAP_beta'_C			912	1369	8.44171E-86
Pfam	PF04983	RNA polymerase Rpb1, domain 3	IPR007066	RNA polymerase Rpb1, domain 3	489	649	4.2E-20
Gene3D	G3DSA:1.10.40.90				374	416	7.6E-19
Hamap	MF_01322	DNA-directed RNA polymerase subunit beta' [rpoC].	IPR012754	DNA-directed RNA polymerase, subunit beta-prime	10	1383	18.88
Coils	Coil				1411	1413	-
Gene3D	G3DSA:2.40.50.100				1158	1221	9.5E-67
SMART	SM00663		IPR006592	RNA polymerase, N-terminal	235	514	2.3E-176
Pfam	PF04998	RNA polymerase Rpb1, domain 5	IPR007081	RNA polymerase Rpb1, domain 5	771	1322	3.1E-78
Gene3D	G3DSA:1.10.150.390				1322	1383	3.7E-28
Pfam	PF04997	RNA polymerase Rpb1, domain 1	IPR007080	RNA polymerase Rpb1, domain 1	17	342	8.8E-88
CDD	cd01609	RNAP_beta'_N			17	818	0.0
Gene3D	G3DSA:2.40.50.100				1029	1133	2.6E-29
Gene3D	G3DSA:2.40.50.100				953	1028	1.8E-27
MobiDBLite	mobidb-lite	consensus disorder prediction			1392	1413	-
Pfam	PF00623	RNA polymerase Rpb1, domain 2	IPR000722	RNA polymerase, alpha subunit	391	485	1.5E-27
SUPERFAMILY	SSF64484				16	1369	0.0
Gene3D	G3DSA:1.10.132.30		IPR038120	RNA polymerase Rpb1, funnel domain superfamily	646	795	8.7E-64
Gene3D	G3DSA:1.10.274.100		IPR042102	RNA polymerase Rpb1, domain 3 superfamily	490	645	3.3E-36
Gene3D	G3DSA:1.10.1790.20				1142	1320	9.5E-67
Pfam	PF00623	RNA polymerase Rpb1, domain 2	IPR000722	RNA polymerase, alpha subunit	344	392	5.6E-8
Pfam	PF05000	RNA polymerase Rpb1, domain 4	IPR007083	RNA polymerase Rpb1, domain 4	679	768	6.1E-19
TIGRFAM	TIGR02386	rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit	IPR012754	DNA-directed RNA polymerase, subunit beta-prime	19	1373	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.