Burkholderia cenocepacia J2315, BCAL0131 (tar)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 553 652 -
Pfam PF02203 Tar ligand binding domain homologue IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 1 176 4.4E-46
CDD cd06225 HAMP IPR003660 HAMP domain 217 261 6.40878E-7
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 289 318 2.3E-60
Gene3D G3DSA:1.10.287.950 215 517 7.8E-90
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 272 501 51.385
SUPERFAMILY SSF58104 235 516 1.31E-72
SMART SM00304 IPR003660 HAMP domain 215 267 4.7E-10
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 483 2.5E-52
Gene3D G3DSA:1.20.120.30 23 191 1.7E-6
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 395 424 2.3E-60
Coils Coil 291 311 -
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 443 472 2.3E-60
CDD cd00181 Tar_Tsr_LBD IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 45 174 9.44629E-13
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 215 267 9.57
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 366 393 2.3E-60
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 268 515 7.0E-90
CDD cd11386 MCP_signal 295 486 3.49819E-54
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 61 76 2.3E-60
Pfam PF00672 HAMP domain IPR003660 HAMP domain 213 262 8.0E-9
SUPERFAMILY SSF47170 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily 26 178 1.05E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.