Burkholderia cenocepacia J2315, BCAL0003
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF12802
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF12802
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 7 | 151 | 1.7E-26 | |
| SMART | SM00347 | IPR000835 | MarR-type HTH domain | 31 | 131 | 4.3E-10 | |
| SUPERFAMILY | SSF46785 | IPR036390 | Winged helix DNA-binding domain superfamily | 13 | 144 | 6.11E-24 | |
| ProSiteProfiles | PS50995 | MarR-type HTH domain profile. | IPR000835 | MarR-type HTH domain | 11 | 143 | 19.3 |
| Pfam | PF12802 | MarR family | IPR000835 | MarR-type HTH domain | 37 | 96 | 9.0E-14 |
| CDD | cd00090 | HTH_ARSR | IPR011991 | ArsR-like helix-turn-helix domain | 40 | 106 | 3.47154E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.