Burkholderia pseudomallei K96243, BPSL1207 (pnp)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00013
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46915
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps00240 Pyrimidine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bps00230 Purine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 468 536 1.1E-4
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 563 620 9.1E-11
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 331 463 2.6E-23
SUPERFAMILY SSF55666 IPR036345 Exoribonuclease, PH domain 2 superfamily 457 555 2.38E-28
Gene3D G3DSA:3.30.230.70 IPR027408 PNPase/RNase PH domain superfamily 1 231 7.1E-81
TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 12 698 0.0
CDD cd04472 S1_PNPase 629 695 1.01636E-30
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 627 704 2.76E-20
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 4 146 5.06E-51
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 17 146 4.5E-20
SUPERFAMILY SSF54791 IPR036612 K Homology domain, type 1 superfamily 561 647 1.37E-23
CDD cd11363 RNase_PH_PNPase_1 7 235 6.34632E-127
CDD cd02393 PNPase_KH 560 620 3.01656E-25
CDD cd11364 RNase_PH_PNPase_2 330 549 1.63187E-152
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 5 700 30.232
SMART SM00322 IPR004087 K Homology domain 559 624 1.4E-13
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 243 327 1.9E-18
ProSiteProfiles PS50084 Type-1 KH domain profile. 560 619 14.529
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 629 697 21.236
Gene3D G3DSA:3.30.1370.10 IPR036612 K Homology domain, type 1 superfamily 557 628 4.0E-21
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 301 495 2.18E-50
PIRSF PIRSF005499 IPR012162 Polyribonucleotide nucleotidyltransferase 3 713 1.1E-300
SUPERFAMILY SSF55666 IPR036345 Exoribonuclease, PH domain 2 superfamily 147 237 3.79E-30
Gene3D G3DSA:3.30.230.70 IPR027408 PNPase/RNase PH domain superfamily 236 556 2.2E-118
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 149 212 4.2E-12
Gene3D G3DSA:2.40.50.140 629 700 1.5E-26
SUPERFAMILY SSF46915 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily 241 328 1.1E-16
SMART SM00316 IPR022967 RNA-binding domain, S1 627 697 1.7E-23
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 626 697 8.3E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.