Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0004654 | polyribonucleotide nucleotidyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003723 | RNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00013
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003676 | nucleic acid binding |
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006402 | mRNA catabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006396 | RNA processing |
Inferred from Sequence Model
Term mapped from: InterPro:SSF46915
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | bps00240 | Pyrimidine metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bps03018 | RNA degradation | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bps00230 | Purine metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF03725 | 3' exoribonuclease family, domain 2 | IPR015847 | Exoribonuclease, phosphorolytic domain 2 | 468 | 536 | 1.1E-4 |
Pfam | PF00013 | KH domain | IPR004088 | K Homology domain, type 1 | 563 | 620 | 9.1E-11 |
Pfam | PF01138 | 3' exoribonuclease family, domain 1 | IPR001247 | Exoribonuclease, phosphorolytic domain 1 | 331 | 463 | 2.6E-23 |
SUPERFAMILY | SSF55666 | IPR036345 | Exoribonuclease, PH domain 2 superfamily | 457 | 555 | 2.38E-28 | |
Gene3D | G3DSA:3.30.230.70 | IPR027408 | PNPase/RNase PH domain superfamily | 1 | 231 | 7.1E-81 | |
TIGRFAM | TIGR03591 | polynuc_phos: polyribonucleotide nucleotidyltransferase | IPR012162 | Polyribonucleotide nucleotidyltransferase | 12 | 698 | 0.0 |
CDD | cd04472 | S1_PNPase | 629 | 695 | 1.01636E-30 | ||
SUPERFAMILY | SSF50249 | IPR012340 | Nucleic acid-binding, OB-fold | 627 | 704 | 2.76E-20 | |
SUPERFAMILY | SSF54211 | IPR020568 | Ribosomal protein S5 domain 2-type fold | 4 | 146 | 5.06E-51 | |
Pfam | PF01138 | 3' exoribonuclease family, domain 1 | IPR001247 | Exoribonuclease, phosphorolytic domain 1 | 17 | 146 | 4.5E-20 |
SUPERFAMILY | SSF54791 | IPR036612 | K Homology domain, type 1 superfamily | 561 | 647 | 1.37E-23 | |
CDD | cd11363 | RNase_PH_PNPase_1 | 7 | 235 | 6.34632E-127 | ||
CDD | cd02393 | PNPase_KH | 560 | 620 | 3.01656E-25 | ||
CDD | cd11364 | RNase_PH_PNPase_2 | 330 | 549 | 1.63187E-152 | ||
Hamap | MF_01595 | Polyribonucleotide nucleotidyltransferase [pnp]. | IPR012162 | Polyribonucleotide nucleotidyltransferase | 5 | 700 | 30.232 |
SMART | SM00322 | IPR004087 | K Homology domain | 559 | 624 | 1.4E-13 | |
Pfam | PF03726 | Polyribonucleotide nucleotidyltransferase, RNA binding domain | IPR015848 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 243 | 327 | 1.9E-18 |
ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 560 | 619 | 14.529 | ||
ProSiteProfiles | PS50126 | S1 domain profile. | IPR003029 | S1 domain | 629 | 697 | 21.236 |
Gene3D | G3DSA:3.30.1370.10 | IPR036612 | K Homology domain, type 1 superfamily | 557 | 628 | 4.0E-21 | |
SUPERFAMILY | SSF54211 | IPR020568 | Ribosomal protein S5 domain 2-type fold | 301 | 495 | 2.18E-50 | |
PIRSF | PIRSF005499 | IPR012162 | Polyribonucleotide nucleotidyltransferase | 3 | 713 | 1.1E-300 | |
SUPERFAMILY | SSF55666 | IPR036345 | Exoribonuclease, PH domain 2 superfamily | 147 | 237 | 3.79E-30 | |
Gene3D | G3DSA:3.30.230.70 | IPR027408 | PNPase/RNase PH domain superfamily | 236 | 556 | 2.2E-118 | |
Pfam | PF03725 | 3' exoribonuclease family, domain 2 | IPR015847 | Exoribonuclease, phosphorolytic domain 2 | 149 | 212 | 4.2E-12 |
Gene3D | G3DSA:2.40.50.140 | 629 | 700 | 1.5E-26 | |||
SUPERFAMILY | SSF46915 | IPR036456 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily | 241 | 328 | 1.1E-16 | |
SMART | SM00316 | IPR022967 | RNA-binding domain, S1 | 627 | 697 | 1.7E-23 | |
Pfam | PF00575 | S1 RNA binding domain | IPR003029 | S1 domain | 626 | 697 | 8.3E-17 |