Burkholderia ambifaria AMMD, BAMB_RS26405 (rpfR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 IPR000160 GGDEF domain 225 397 3.3E-53
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 410 665 1.9E-99
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 236 392 7.5E-43
Gene3D G3DSA:3.30.450.20 104 233 6.0E-12
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 267 399 32.612
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 114 232 1.9E-7
CDD cd01949 GGDEF IPR000160 GGDEF domain 237 395 9.73239E-57
CDD cd01948 EAL IPR001633 EAL domain 413 652 9.19622E-109
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 123 234 4.89E-12
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 408 661 79.561
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 414 660 3.66E-90
Gene3D G3DSA:3.30.70.270 234 409 9.0E-55
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 108 163 10.908
Pfam PF00563 EAL domain IPR001633 EAL domain 414 647 6.7E-75
SMART SM00052 IPR001633 EAL domain 407 652 1.1E-113
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 233 396 4.5E-35
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 241 398 4.32E-44
SMART SM00091 IPR000014 PAS domain 110 176 0.0099

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.