Burkholderia cenocepacia K56-2Valvano, BURCENK562V_RS12680 (cepR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009372 quorum sensing
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniprotKB:O30919
ECO:0000250
sequence similarity evidence used in manual assertion
9922236 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00421
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 176 190 1.3E-10
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 175 230 1.9E-19
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 159 237 9.52E-21
ProSitePatterns PS00622 LuxR-type HTH domain signature. IPR000792 Transcription regulator LuxR, C-terminal 190 217 -
Gene3D G3DSA:3.30.450.80 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 3 168 2.1E-52
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 173 230 8.2E-24
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 169 237 1.9E-29
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 206 218 1.3E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 190 206 1.3E-10
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 18 157 2.8E-30
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 169 234 30.811
SUPERFAMILY SSF75516 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 4 166 4.05E-40
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 176 232 2.8376E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.