Burkholderia cenocepacia K56-2Valvano, BURCENK562V_RS33010 (shvR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900190 regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 17967860 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like 103 304 2.26984E-52
SUPERFAMILY SSF53850 102 309 1.3E-33
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 101 306 3.9E-31
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 42 52 9.6E-10
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 15 103 4.6E-21
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 16 71 25.498
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 18 75 2.7E-19
Gene3D G3DSA:3.40.190.10 171 278 7.4E-48
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 31 42 9.6E-10
Gene3D G3DSA:3.40.190.10 111 304 7.4E-48
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 52 63 9.6E-10
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 12 94 7.88E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.